Module	Section	Sample Name	Source
Samtools	flagstat	GR-365_Ctrl_T2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_Ctrl_T2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_shGR_T2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_shGR_T2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_Ctrl_TD1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_Ctrl_TD1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	Ctrl_INPUT1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/Ctrl_INPUT1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_shGR_V1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_shGR_V1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_shGR_D1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_shGR_D1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	shGR_INPUT2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/shGR_INPUT2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_Ctrl_TD2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_Ctrl_TD2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	Ctrl_INPUT2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/Ctrl_INPUT2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_Ctrl_V2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_Ctrl_V2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_shGR_V2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_shGR_V2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_Ctrl_D1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_Ctrl_D1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_Ctrl_TD2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_Ctrl_TD2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_shGR_T1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_shGR_T1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_shGR_V1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_shGR_V1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_Ctrl_T1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_Ctrl_T1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_Ctrl_T1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_Ctrl_T1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_Ctrl_TD1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_Ctrl_TD1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_Ctrl_D1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_Ctrl_D1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_Ctrl_V2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_Ctrl_V2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	shGR_INPUT1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/shGR_INPUT1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_Ctrl_V1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_Ctrl_V1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_shGR_D1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_shGR_D1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_shGR_T2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_shGR_T2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_shGR_TD2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_shGR_TD2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_shGR_TD2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_shGR_TD2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_shGR_D2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_shGR_D2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_Ctrl_T2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_Ctrl_T2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_shGR_V2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_shGR_V2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_shGR_D2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_shGR_D2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_shGR_TD1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_shGR_TD1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_Ctrl_V1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_Ctrl_V1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-365_Ctrl_D2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-365_Ctrl_D2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_Ctrl_D2.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_Ctrl_D2.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_shGR_T1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_shGR_T1.cat.trim.sorted.bam.flagstat
Samtools	flagstat	GR-IA1_shGR_TD1.cat.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/bams/sorted/GR-IA1_shGR_TD1.cat.trim.sorted.bam.flagstat
Bowtie 2	all_sections	GR-365_shGR_D1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_shGR_D1_B.trim.stderr
Bowtie 2	all_sections	GR-365_shGR_T2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_shGR_T2_B.trim.stderr
Bowtie 2	all_sections	GR-365_Ctrl_T1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_Ctrl_T1_B.trim.stderr
Bowtie 2	all_sections	shGR_INPUT1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/shGR_INPUT1_B.trim.stderr
Bowtie 2	all_sections	GR-365_Ctrl_V1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_Ctrl_V1_B.trim.stderr
Bowtie 2	all_sections	GR-365_shGR_TD2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_shGR_TD2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_shGR_V1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_shGR_V1_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_Ctrl_T1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_Ctrl_T1_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_shGR_D2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_shGR_D2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_shGR_T1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_shGR_T1_B.trim.stderr
Bowtie 2	all_sections	GR-365_shGR_T1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_shGR_T1_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_shGR_TD1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_shGR_TD1_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_Ctrl_T2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_Ctrl_T2_B.trim.stderr
Bowtie 2	all_sections	GR-365_Ctrl_TD1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_Ctrl_TD1_B.trim.stderr
Bowtie 2	all_sections	GR-365_shGR_TD1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_shGR_TD1_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_Ctrl_V1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_Ctrl_V1_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_shGR_D1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_shGR_D1_B.trim.stderr
Bowtie 2	all_sections	Ctrl_INPUT1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/Ctrl_INPUT1_B.trim.stderr
Bowtie 2	all_sections	Ctrl_INPUT2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/Ctrl_INPUT2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_Ctrl_TD2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_Ctrl_TD2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_Ctrl_D2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_Ctrl_D2_B.trim.stderr
Bowtie 2	all_sections	GR-365_shGR_V2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_shGR_V2_B.trim.stderr
Bowtie 2	all_sections	GR-365_shGR_V1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_shGR_V1_B.trim.stderr
Bowtie 2	all_sections	GR-365_Ctrl_TD2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_Ctrl_TD2_B.trim.stderr
Bowtie 2	all_sections	GR-365_Ctrl_T2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_Ctrl_T2_B.trim.stderr
Bowtie 2	all_sections	GR-365_shGR_D2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_shGR_D2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_shGR_V2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_shGR_V2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_shGR_T2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_shGR_T2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_shGR_TD2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_shGR_TD2_B.trim.stderr
Bowtie 2	all_sections	GR-365_Ctrl_D2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_Ctrl_D2_B.trim.stderr
Bowtie 2	all_sections	shGR_INPUT2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/shGR_INPUT2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_Ctrl_V2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_Ctrl_V2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_Ctrl_TD1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_Ctrl_TD1_B.trim.stderr
Bowtie 2	all_sections	GR-365_Ctrl_V2_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_Ctrl_V2_B.trim.stderr
Bowtie 2	all_sections	GR-IA1_Ctrl_D1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-IA1_Ctrl_D1_B.trim.stderr
Bowtie 2	all_sections	GR-365_Ctrl_D1_B.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/mapped/sams/GR-365_Ctrl_D1_B.trim.stderr
FastQC	all_sections	GR-365_Ctrl_D2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_V1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_D2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT1_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT1_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D1_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_TD2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V2_out_hg38_2_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/Ctrl_INPUT1_A_R1_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V2_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_D1_A_R1_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V1_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_TD1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_V1_A_R2.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/shGR_INPUT2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_TD2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_T2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V1_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_TD2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_TD1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_V1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_V1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_T2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_T1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_T1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D2_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_D1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_TD2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_V2_A_R2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_T1_B_R1.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_TD2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD1_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	shGR_INPUT1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D1_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D2_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T1_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_D2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_T2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V1_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_V2_B_R1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_D1_A_R2_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT2_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD1_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_D1_B_R2.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_TD1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_V1_A_R2_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/Ctrl_INPUT1_A_R2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_D1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_V2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_TD2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_T1_B_R1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD1_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_D2_A_R2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_D1_B_R1.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T1_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_V2_B_R1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_T2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T1_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_T1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_T2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D1_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/Ctrl_INPUT1_B_R1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_D2_B_R1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/Ctrl_INPUT2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_V2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_V1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_T1_B_R2.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/Ctrl_INPUT1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_V1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_TD1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_TD1_B_R2.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/Ctrl_INPUT1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_V1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_D2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_D2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_T2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_V2_A_R1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_V1_A_R1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V2_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_TD1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_T1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_T1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T2_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V2_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_T1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD1_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_TD1_B_R2_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_D1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_TD1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_T1_A_R1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_T1_A_R2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_TD1_B_R2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_TD1_B_R1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_D2_B_R1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_V1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T1_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_D2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_V1_B_R1.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/Ctrl_INPUT1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_V2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_V2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_T2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_V1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_D1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_T2_A_R2.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/Ctrl_INPUT2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_V2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD2_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_D1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T1_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T1_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_T2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D1_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_D1_B_R2_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_D1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_D2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_TD2_B_R2_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_TD1_B_R1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	shGR_INPUT2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	shGR_INPUT2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_D1_B_R1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_TD1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_T2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_V1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_V1_A_R2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_T2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V1_out_hg38_2_fastqc.zip
FastQC	all_sections	shGR_INPUT2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/shGR_INPUT2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V1_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_V1_B_R1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_D1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_D1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_TD2_A_R1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_TD1_A_R2_fastqc.zip
FastQC	all_sections	shGR_INPUT2_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT2_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	shGR_INPUT2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T2_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_V2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_TD1_B_R2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_TD2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_D1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_V1_B_R2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_V1_A_R1.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_TD1_A_R2_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_TD1_B_R1.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_TD2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T1_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T2_out_hg38_1_fastqc.zip
FastQC	all_sections	shGR_INPUT1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/shGR_INPUT1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_V2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V1_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V1_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD1_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_TD2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD1_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D1_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_D1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_T2_B_R1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_T2_B_R2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD1_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_TD1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_TD1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_TD1_B_R2.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_D2_B_R2_fastqc.zip
FastQC	all_sections	shGR_INPUT2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D1_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_V1_A_R1.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/shGR_INPUT2_A_R2_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_D2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_V2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_T2_B_R1.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_T2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_V1_A_R2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_T1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_V1_A_R1_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_T1_B_R1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_T1_B_R2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D1_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_TD1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V1_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_D2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_D2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD1_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V1_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_T2_A_R1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_TD1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_TD2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_V1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	shGR_INPUT1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/shGR_INPUT1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_T1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T1_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_T2_B_R1_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_T1_A_R1_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_D2_B_R2.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/Ctrl_INPUT2_A_R1_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/Ctrl_INPUT2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_V2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_V1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_D2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_V2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_T1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/Ctrl_INPUT2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD2_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_D2_A_R1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_TD2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	shGR_INPUT1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/shGR_INPUT1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V1_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_D2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V1_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T1_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_D2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_D2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_V2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_D1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_T1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D2_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_V2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_T1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_V2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	shGR_INPUT2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V1_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_B_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_T2_B_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_Ctrl_TD1_A_R1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD1_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_TD1_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_T2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_D2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_D2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_B_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D2_B_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_TD2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_V2_A_R2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_TD2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_T1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_T2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD1_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD1_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_TD2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_T2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_T2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T1_out_hg38_2_fastqc.zip
FastQC	all_sections	shGR_INPUT2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/shGR_INPUT2_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD1_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_D1_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_D1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_D1_B_R2_fastqc.zip
FastQC	all_sections	shGR_INPUT2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/shGR_INPUT2_A_R1.trim_fastqc.zip
FastQC	all_sections	Ctrl_INPUT2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/Ctrl_INPUT2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_V2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_V2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_D1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T2_B_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_T2_B_R2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_TD2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_TD1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_out_hg38_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_T2_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_T2_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_D1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_T1_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_V1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_T1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_T1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D1_out_hg38_2_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_A_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD2_A_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD2_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_V1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_V1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_shGR_TD2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	Ctrl_INPUT1_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/Ctrl_INPUT1_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_V2_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_D2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_T2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_T2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D2_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_D1_B_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_D1_A_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_D1_A_R1.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_TD1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD2_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_TD2_A_R1.trim_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_B_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_shGR_V2_B_R1.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT1_A_R1.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/shGR_INPUT1_A_R1.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT1_out_hg38_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT1_out_hg38_1_fastqc.zip
FastQC	all_sections	shGR_INPUT1_out_hg38_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT1_out_hg38_2_fastqc.zip
FastQC	all_sections	shGR_INPUT1_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/shGR_INPUT1_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_D1_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_D1_B_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_D1_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_D1_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_TD2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_Ctrl_TD2_B_R2.trim_fastqc.zip
FastQC	all_sections	shGR_INPUT1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/shGR_INPUT1_B_R1_fastqc.zip
FastQC	all_sections	shGR_INPUT1_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/shGR_INPUT1_B_R2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_TD1_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_shGR_TD1_B_R1_fastqc.zip
FastQC	all_sections	GR-365_shGR_T1_A_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-365_shGR_T1_A_R2.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_Ctrl_TD2_B_R2.clean.trim_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_TD2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-IA1_Ctrl_TD2_B_R1_fastqc.zip
FastQC	all_sections	GR-365_Ctrl_V2_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-365_Ctrl_V2_out_p_aeruginosa_F5677_1_fastqc.zip
FastQC	all_sections	GR-IA1_Ctrl_V2_B_R2.trim	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/FastQC/GR-IA1_Ctrl_V2_B_R2.trim_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_B_R2	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_TD2_B_R2_fastqc.zip
FastQC	all_sections	GR-365_shGR_TD2_B_R1	/scratch/Users/magr0763/Gerber/ChIP-seq2/fastq/FastQC/GR-365_shGR_TD2_B_R1_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_B_out_p_aeruginosa_F5677_2	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V2_B_out_p_aeruginosa_F5677_2_fastqc.zip
FastQC	all_sections	GR-IA1_shGR_V2_B_out_p_aeruginosa_F5677_1	/scratch/Users/magr0763/Gerber/ChIP-seq2/bbsplit/FastQC/GR-IA1_shGR_V2_B_out_p_aeruginosa_F5677_1_fastqc.zip
RSeQC	read_distribution	GR-IA1_shGR_TD1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_shGR_TD1.read_dist.txt
RSeQC	read_distribution	GR-IA1_Ctrl_TD2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_Ctrl_TD2.read_dist.txt
RSeQC	read_distribution	GR-IA1_Ctrl_TD1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_Ctrl_TD1.read_dist.txt
RSeQC	read_distribution	GR-IA1_shGR_TD2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_shGR_TD2.read_dist.txt
RSeQC	read_distribution	GR-365_Ctrl_D2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_Ctrl_D2.read_dist.txt
RSeQC	read_distribution	GR-IA1_shGR_D1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_shGR_D1.read_dist.txt
RSeQC	read_distribution	GR-IA1_Ctrl_V1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_Ctrl_V1.read_dist.txt
RSeQC	read_distribution	GR-IA1_shGR_T2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_shGR_T2.read_dist.txt
RSeQC	read_distribution	GR-365_Ctrl_D1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_Ctrl_D1.read_dist.txt
RSeQC	read_distribution	GR-365_shGR_D1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_shGR_D1.read_dist.txt
RSeQC	read_distribution	GR-365_Ctrl_T2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_Ctrl_T2.read_dist.txt
RSeQC	read_distribution	GR-365_Ctrl_V1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_Ctrl_V1.read_dist.txt
RSeQC	read_distribution	Ctrl_INPUT2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/Ctrl_INPUT2.read_dist.txt
RSeQC	read_distribution	shGR_INPUT2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/shGR_INPUT2.read_dist.txt
RSeQC	read_distribution	GR-365_shGR_V2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_shGR_V2.read_dist.txt
RSeQC	read_distribution	GR-365_Ctrl_V2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_Ctrl_V2.read_dist.txt
RSeQC	read_distribution	GR-365_Ctrl_T1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_Ctrl_T1.read_dist.txt
RSeQC	read_distribution	shGR_INPUT1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/shGR_INPUT1.read_dist.txt
RSeQC	read_distribution	GR-IA1_Ctrl_V2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_Ctrl_V2.read_dist.txt
RSeQC	read_distribution	GR-365_shGR_V1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_shGR_V1.read_dist.txt
RSeQC	read_distribution	GR-365_shGR_TD1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_shGR_TD1.read_dist.txt
RSeQC	read_distribution	GR-365_Ctrl_TD1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_Ctrl_TD1.read_dist.txt
RSeQC	read_distribution	Ctrl_INPUT1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/Ctrl_INPUT1.read_dist.txt
RSeQC	read_distribution	GR-IA1_shGR_V2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_shGR_V2.read_dist.txt
RSeQC	read_distribution	GR-IA1_shGR_T1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_shGR_T1.read_dist.txt
RSeQC	read_distribution	GR-365_shGR_T2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_shGR_T2.read_dist.txt
RSeQC	read_distribution	GR-365_shGR_T1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_shGR_T1.read_dist.txt
RSeQC	read_distribution	GR-IA1_Ctrl_T1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_Ctrl_T1.read_dist.txt
RSeQC	read_distribution	GR-365_shGR_D2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_shGR_D2.read_dist.txt
RSeQC	read_distribution	GR-IA1_Ctrl_T2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_Ctrl_T2.read_dist.txt
RSeQC	read_distribution	GR-IA1_Ctrl_D1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_Ctrl_D1.read_dist.txt
RSeQC	read_distribution	GR-365_shGR_TD2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_shGR_TD2.read_dist.txt
RSeQC	read_distribution	GR-365_Ctrl_TD2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-365_Ctrl_TD2.read_dist.txt
RSeQC	read_distribution	GR-IA1_shGR_D2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_shGR_D2.read_dist.txt
RSeQC	read_distribution	GR-IA1_Ctrl_D2.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_Ctrl_D2.read_dist.txt
RSeQC	read_distribution	GR-IA1_shGR_V1.read_dist	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/rseqc/GR-IA1_shGR_V1.read_dist.txt
BBTools	all_sections	GR-IA1_Ctrl_V1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_V1_A.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_V2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_V2_A.ehist.txt
BBTools	all_sections	GR-365_shGR_D1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_D1_B.ehist.txt
BBTools	all_sections	GR-365_shGR_T1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_T1_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_T1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_T1_B.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_D1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_D1_A.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_D1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_D1_B.ehist.txt
BBTools	all_sections	GR-IA1_shGR_T1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_T1_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_T2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_T2_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_T2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_T2_B.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_T1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_T1_A.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_T1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_T1_B.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_TD1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_TD1_A.ehist.txt
BBTools	all_sections	GR-365_shGR_T1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_T1_B.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_D2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_D2_A.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_TD1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_TD1_B.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_V1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_V1_B.ehist.txt
BBTools	all_sections	GR-365_shGR_D2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_D2_B.ehist.txt
BBTools	all_sections	GR-365_shGR_D2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_D2_A.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_V2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_V2_B.ehist.txt
BBTools	all_sections	GR-365_shGR_V1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_V1_B.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_D2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_D2_B.ehist.txt
BBTools	all_sections	GR-365_shGR_V1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_V1_A.ehist.txt
BBTools	all_sections	Ctrl_INPUT1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/Ctrl_INPUT1_B.ehist.txt
BBTools	all_sections	Ctrl_INPUT1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/Ctrl_INPUT1_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_V2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_V2_B.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_T2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_T2_B.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_T2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_T2_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_V2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_V2_A.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_TD2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_TD2_B.ehist.txt
BBTools	all_sections	GR-IA1_shGR_V1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_V1_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_V1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_V1_B.ehist.txt
BBTools	all_sections	GR-365_Ctrl_TD1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_TD1_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_TD1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_TD1_B.ehist.txt
BBTools	all_sections	GR-365_shGR_V2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_V2_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_D2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_D2_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_D2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_D2_B.ehist.txt
BBTools	all_sections	GR-365_shGR_V2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_V2_B.ehist.txt
BBTools	all_sections	GR-365_shGR_TD2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_TD2_B.ehist.txt
BBTools	all_sections	shGR_INPUT1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/shGR_INPUT1_A.ehist.txt
BBTools	all_sections	shGR_INPUT1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/shGR_INPUT1_B.ehist.txt
BBTools	all_sections	GR-365_shGR_TD2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_TD2_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_V1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_V1_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_T2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_T2_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_T2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_T2_B.ehist.txt
BBTools	all_sections	GR-365_Ctrl_V1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_V1_B.ehist.txt
BBTools	all_sections	Ctrl_INPUT2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/Ctrl_INPUT2_A.ehist.txt
BBTools	all_sections	Ctrl_INPUT2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/Ctrl_INPUT2_B.ehist.txt
BBTools	all_sections	GR-365_Ctrl_TD2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_TD2_B.ehist.txt
BBTools	all_sections	GR-365_Ctrl_TD2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_TD2_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_V2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_V2_B.ehist.txt
BBTools	all_sections	GR-IA1_shGR_D1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_D1_B.ehist.txt
BBTools	all_sections	GR-IA1_shGR_D1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_D1_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_V2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_V2_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_D2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_D2_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_D2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_D2_B.ehist.txt
BBTools	all_sections	GR-IA1_Ctrl_TD2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_Ctrl_TD2_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_T1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_T1_B.ehist.txt
BBTools	all_sections	GR-365_Ctrl_T1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_T1_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_TD1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_TD1_A.ehist.txt
BBTools	all_sections	GR-IA1_shGR_TD1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_TD1_B.ehist.txt
BBTools	all_sections	GR-IA1_shGR_TD2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_TD2_B.ehist.txt
BBTools	all_sections	GR-IA1_shGR_TD2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-IA1_shGR_TD2_A.ehist.txt
BBTools	all_sections	GR-365_Ctrl_D1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_D1_B.ehist.txt
BBTools	all_sections	GR-365_Ctrl_D1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_Ctrl_D1_A.ehist.txt
BBTools	all_sections	shGR_INPUT2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/shGR_INPUT2_B.ehist.txt
BBTools	all_sections	GR-365_shGR_TD1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_TD1_A.ehist.txt
BBTools	all_sections	GR-365_shGR_T2_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_T2_B.ehist.txt
BBTools	all_sections	GR-365_shGR_T2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_T2_A.ehist.txt
BBTools	all_sections	GR-365_shGR_TD1_B	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_TD1_B.ehist.txt
BBTools	all_sections	shGR_INPUT2_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/shGR_INPUT2_A.ehist.txt
BBTools	all_sections	GR-365_shGR_D1_A	/scratch/Users/magr0763/Gerber/ChIP-seq2/trimmed/GR-365_shGR_D1_A.ehist.txt
Preseq	all_sections	GR-365_Ctrl_T1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_T1.lc_extrap.txt
Preseq	all_sections	GR-IA1_Ctrl_D2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_D2.lc_extrap.txt
Preseq	all_sections	GR-365_Ctrl_T2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_T2.c_curve.txt
Preseq	all_sections	GR-365_Ctrl_TD2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_TD2.lc_extrap.txt
Preseq	all_sections	GR-IA1_shGR_D2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_D2.c_curve.txt
Preseq	all_sections	GR-365_Ctrl_T2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_T2.lc_extrap.txt
Preseq	all_sections	GR-365_Ctrl_T1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_T1.c_curve.txt
Preseq	all_sections	GR-365_shGR_T1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_T1.c_curve.txt
Preseq	all_sections	GR-365_shGR_V2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_V2.c_curve.txt
Preseq	all_sections	GR-IA1_Ctrl_T2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_T2.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_TD1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_TD1.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_D1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_D1.c_curve.txt
Preseq	all_sections	GR-365_Ctrl_V2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_V2.lc_extrap.txt
Preseq	all_sections	GR-IA1_Ctrl_V1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_V1.lc_extrap.txt
Preseq	all_sections	shGR_INPUT2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/shGR_INPUT2.lc_extrap.txt
Preseq	all_sections	GR-365_Ctrl_TD1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_TD1.lc_extrap.txt
Preseq	all_sections	GR-IA1_shGR_TD1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_TD1.c_curve.txt
Preseq	all_sections	GR-365_Ctrl_D2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_D2.lc_extrap.txt
Preseq	all_sections	GR-IA1_Ctrl_V2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_V2.lc_extrap.txt
Preseq	all_sections	GR-IA1_Ctrl_T1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_T1.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_D2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_D2.lc_extrap.txt
Preseq	all_sections	GR-IA1_shGR_V1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_V1.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_V1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_V1.lc_extrap.txt
Preseq	all_sections	GR-365_Ctrl_D2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_D2.c_curve.txt
Preseq	all_sections	Ctrl_INPUT2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/Ctrl_INPUT2.c_curve.txt
Preseq	all_sections	GR-365_shGR_D1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_D1.lc_extrap.txt
Preseq	all_sections	GR-365_Ctrl_V2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_V2.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_V2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_V2.c_curve.txt
Preseq	all_sections	GR-365_Ctrl_TD1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_TD1.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_T2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_T2.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_T2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_T2.lc_extrap.txt
Preseq	all_sections	shGR_INPUT2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/shGR_INPUT2.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_T2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_T2.c_curve.txt
Preseq	all_sections	GR-IA1_Ctrl_T2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_T2.c_curve.txt
Preseq	all_sections	GR-IA1_Ctrl_TD1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_TD1.lc_extrap.txt
Preseq	all_sections	GR-IA1_shGR_TD2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_TD2.lc_extrap.txt
Preseq	all_sections	GR-IA1_Ctrl_D1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_D1.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_T1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_T1.c_curve.txt
Preseq	all_sections	GR-365_Ctrl_V1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_V1.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_T1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_T1.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_T2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_T2.c_curve.txt
Preseq	all_sections	GR-IA1_Ctrl_D1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_D1.lc_extrap.txt
Preseq	all_sections	GR-IA1_Ctrl_D2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_D2.c_curve.txt
Preseq	all_sections	GR-IA1_Ctrl_TD1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_TD1.c_curve.txt
Preseq	all_sections	GR-365_Ctrl_D1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_D1.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_V1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_V1.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_D2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_D2.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_D2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_D2.c_curve.txt
Preseq	all_sections	GR-365_shGR_TD1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_TD1.c_curve.txt
Preseq	all_sections	GR-IA1_Ctrl_V1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_V1.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_V2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_V2.lc_extrap.txt
Preseq	all_sections	GR-365_Ctrl_V1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_V1.lc_extrap.txt
Preseq	all_sections	GR-IA1_shGR_V1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_V1.c_curve.txt
Preseq	all_sections	Ctrl_INPUT1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/Ctrl_INPUT1.lc_extrap.txt
Preseq	all_sections	GR-IA1_Ctrl_V2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_V2.c_curve.txt
Preseq	all_sections	GR-365_shGR_TD2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_TD2.c_curve.txt
Preseq	all_sections	shGR_INPUT1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/shGR_INPUT1.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_D1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_D1.c_curve.txt
Preseq	all_sections	GR-365_shGR_TD2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_TD2.lc_extrap.txt
Preseq	all_sections	GR-IA1_Ctrl_TD2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_TD2.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_TD1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_TD1.lc_extrap.txt
Preseq	all_sections	GR-365_Ctrl_TD2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_TD2.c_curve.txt
Preseq	all_sections	Ctrl_INPUT1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/Ctrl_INPUT1.c_curve.txt
Preseq	all_sections	GR-IA1_Ctrl_T1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_T1.c_curve.txt
Preseq	all_sections	shGR_INPUT1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/shGR_INPUT1.lc_extrap.txt
Preseq	all_sections	GR-IA1_Ctrl_TD2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_Ctrl_TD2.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_V2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_V2.lc_extrap.txt
Preseq	all_sections	GR-365_shGR_T1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_shGR_T1.lc_extrap.txt
Preseq	all_sections	GR-IA1_shGR_D1.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_D1.lc_extrap.txt
Preseq	all_sections	Ctrl_INPUT2.lc_extrap	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/Ctrl_INPUT2.lc_extrap.txt
Preseq	all_sections	GR-365_Ctrl_D1.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-365_Ctrl_D1.c_curve.txt
Preseq	all_sections	GR-IA1_shGR_TD2.c_curve	/scratch/Users/magr0763/Gerber/ChIP-seq2/qc/preseq/GR-IA1_shGR_TD2.c_curve.txt
